Principal Investigator
Research Associate
Instructor
Project Coordinator
Research Fellow
Research Fellow
Research Fellow
Research Fellow
Research Fellow
Research Fellow
Research Fellow
Research Fellow
Research Fellow
Research Fellow
Graduate Student
Graduate Student
Graduate Student
Software Engineer
Software Engineer
Bioinformatics Scientist
Software Engineer
Data Curator
Associate Computational Biologist
Associate Computational Biologist
Associate Computational Biologist
Data Wrangler
Data Curator
Associate Computational Biologist
Associate Computational Biologist
Dana Vuzman (2020-2023) PhD in Computational Biology, Weizmann Institute of Science
Dr. Soohyun Lee (2012-2021) PhD in Bioinformatics Boston University → Senior Bioinformatics Scientist
Dr. Burak H Alver (2010-2021) PhD in Physics MIT → Scientific Director
Joanna Lee (2019-2022) Project Coordinator → Senior Administrative Partner, Foundation Medicine
Anna Chung (2016-2019) BS in Psychology, Boston College
Yoo-Jin (Jiny) Ha PhD in Biomedical Systems Informatics Yonsei University College of Medicine
Dr. Aikaterini Chatzipli (2020-2023) PhD in Genetics University of Cambridge → Postdoctoral Fellow, Boston Children’s Hospital
Dr. Ning Shen (2019-2021) PhD in Pharmacology & Certificate in Computational Biology Duke University
Dr. Yu-Han Huang (2018-2021) PhD in Pharmacology Taipei Medical University (Taiwan)
Dr. Yanmei Dou (2017-2021) PhD in Bioinformatics Peking University (China)
Dr. Jinkuk Kim (2017-2020) PhD in Bioinformatics and Integrative Genomics MIT
Dr. Jake (June-Koo) Lee PhD in Medical Science and Engineering Korea Advanced Institute of Science and Technology
Dr. Giorgio Melloni (2017-2019) PhD in Computational Biology Istituto Italiano di Tecnologia (Italy)
Doga Gulhan (2017-2024) PhD in Physics Massachusetts Institute of Technology
Craig Bohrson (2017-2022) PhD HMS Bioinformatics and Integrative Genomics (BIG)
Dr. Vincent (Eun-Cheon) Lim (2016-2017) PhD in Bioinformatics Max-Planck Institute for Developmental Biology
Dr. Tiziana Sanavia (2016-2022) PhD. in Bioengineering University of Padova (Italy)
Dr. Su Wang (2016-2019) PhD in Bioinformatics Tongji University
Dr. Isidro Cortes Ciriano (2016-2020) PhD in Bioinformatics Institut Pasteur Paris (France)
Dr. Geoff Nelson (2016-2022) PhD in Bioinformatics MRC Laboratory of Molecular Biology
Dr. Dhawal Jain (2016-2020) PhD in chromatin dynamics Ludwig Maximilians University (Max-Planck research school)
Dr. Youngsook Lucy Jung (2015-2021) PhD in Health Sciences and Technology Massachusetts Institute of Technology
Dr. Scott P Kallgren (2015-2017) PhD in Yeast Chromatin Biology Columbia University
Dr. Jia Wang (2015-2017) PhD in Neuroscience Institute of Neuroscience
Dr. Minseok (Daniel) Kwon (2015-2020) PhD in Bioinformatics Seoul National University
Dr. Semin Lee (2011-2016) PhD in Biochemistry University of Cambridge
Dr. Lixing Yang (2010-2017) PhD in Genetics University of Georgia
Dr. Eunjung (Alice) Lee PhD in Bioinformatics KAIST
Dr. Andrew Wei Xu PhD University of Ottawa Postdoctoral Fellow (2011-2014)
Dr. Francesco Ferrari PhD in Molecular Biology/Bioinformatics University of Modena and Reggio Emilia
Dr. Huiling Xue PhD in Bioinformatics Chinese Academy of Sciences
Dr. Hyunju Lee PhD in Computer Science University of Southern California
Dr. Hyunsoo Kim PhD University of Minnesota Twin Cities
Dr. Joshua WK Ho PhD in Bioinformatics University of Sydney
Dr. Mikaela Keller PhD Ecole Polytechnique Fédérale de Lausanne Postdoctoral Fellow (2009-2010
Dr. Michael Tolstorukov PhD V. Karazin Kharkov National University
Dr. Nils Gehlenborg PhD in Bioinformatics University of Cambridge and European Bioinformatics Institute
Dr. Peter V Kharchenko PhD in Biophysics Harvard University
Dr. Ruibin Xi PhD in Statistics Washington University in St. Louis
Dr. Shouyong Peng PhD in Physics Boston University
Dr. Simon (Chong) Chu PhD in Computer Science and Engineering University of Connecticut
Dr. Tae-min Kim MD in Medicine and PhD in Microbiology The Catholic University of Korea
Dr. Viktor Ljungström PhD in Medical Genetics Uppsala University (Sweden)
Tilly Rigby (2024-2024) BS, Tufts; Thesis: Supervised by Dr. Glodzik
Niklas Engel (2023-2025) Heidelberg University → PhD Candidate Cambridge University
Teng Gao (2022-2024) PhD student BIG – Thesis: Somatic Genome Evolution in Cancer and Aging through the Lens of Transcription
Nina Xiong (2022-2022) BA, UC Berkeley; Thesis: Characterizing the Activity of Human Endogenous Retroviruses in Disease, MBI
Catherine Song (2022-2022) BS, University of Auckland; Thesis: Validation and analysis of the Clinical Genome Analysis Platform Bioinformatics Pipeline for De Novo and Heterozygous Variant Calling, MBI
Beverly Fu (2022-2024) Harvard College (Statistics/Chemistry) → MD Student, Stanford → Thesis: A Study of the Mutational Signatures of Structural Variation in Human Cancer. (Hoopes Prize)
Courtney Lau (2021-2021) UCLA
Yifan Zhao (2020-2025) PhD student HST (MIT) – Thesis: Decoding Brain Somatic Mosaicism with New Single-Cell Copy Number Analysis Methods
Colin Miller (2020-2020) Washington University in St. Louis
Lawrence Huang (2019-2019) Brown
Ethan Oliver (2019-2019) Tufts
David Geng (2018-2018) Duke
Anuraag Gopaluni (2018-2018) Boston University
Yixuan He (2017-2017) Dartmouth
Rebecca Panitch (2017-2017) Brandeis
Joshua Cook (2017-2022) PhD student BBS (HMS)
Heather Gold (2017-2020) PhD student BIG
Danielle Rubin (2017-2017) University of Chicago
Connor Horton (2017-2018) Harvard College (MCB) → PhD Student UC Berkeley → Thesis: Towards higher standards for quality control and analysis of single-cell Hi-C data.
Jennifer Walsh (2016-2017) Harvard College (Physics) → PhD Student Harvard
Jeewon (Grace) Hwang (2016-2017) Computational Science and Engineering, Harvard SEAS) – BS, KAIST; Thesis: Computational approaches toward analysis of 4D architecture of genomes to reveal chromatin contacts genome-wide
Fritz Lekschas (2015-2016) Freie Universität Berlin → PhD student Harvard School of Applied Sciences and Engineering → Head of Visualization Research
Niklas Smedemark-Margulies (2014-2015) BA, Amherst College; Thesis: Next-Generation Roadmap for Patient-Centered Genomics
Ling-Ya (Monica) Chao (2014-2015) Harvard
Jeremy Liu (2014-2014) Yale
Anton Xue (2014-2015) Boston Latin School → Yale undergrad → UPenn PhD
Lucy Y Liu (2011-2011) Wellesley)
Richard Park (2009-2014) PhD student Bioinformatics
Nathan Clement (2009-2009) Brigham Young University
Matthew Salesi (2009-2009) Princeton
Daniel S Day (2009-2014) PhD student BIG (MIT) – Thesis: The Dissection of VEGFA Stimulus-Responsive Regulatory and Transcriptional Changes in Angiogenesis → Postdoc
Eric Bishop (2008-2012) PhD student Bioinformatics
Julie Yoo (2007-2008) MBA, HST/MIT
Songzi Du (2005-2006) MIT
MinJeong Ahn (2005-2006) MIT
Kathy Ye (2005-2006) MIT
Fan Yang (2005-2006) MIT
Daon Ha (2005-2006) MIT
Christopher Palmer (2005-2006) MIT
Wafa Malik Graduate Student, Biological & Biomedical Sciences program (HMS), G1, Graduate Student, Hata Lab
Benedikt Geiger (2022-2024) Rheinische Friedrich-Wilhelms-Universität Bonn → Thesis: “Correlated Non-Negative Matrix Factorization for Mutational Signature Analysis” → PhD Student BIG
Tae Hee Clara Kim (2021-2025) BS, Wellesley College → Medical Student, Boston University
Phil Grayson (2021-2022) PhD in Organismic and Evolutionary Biology Harvard → Bioinformatics Scientist
Doug Rioux (2021-2024) MD, Yale
Antuan Tran (2021-2023) CS, Harvard → Medical Student, Mayo Clinic
Eric Berg (2020-2021) BA in English and Computer Science, Tufts
Victor Mao (2019-2021) Chemical and Biochemical Engineering, UC Berkeley → Machine Learning Software Engineer, Google
Kent Pitman (2019-2023) Lead Senior Software Developer for the Clinical Genomics Analysis Platform (CGAP)
Clara Bakker (2019-2025) Jr. Scientific Programmer, 4D Nucleome DCIC
Bianca Morris (2019-2025) ALM, Sr. Front End Engineer
Dr. Andrea Cosolo (2019-2023) PhD in Biology Ludwig-Maximilians University of Munich → Scientist
Sarah Reiff (2018-2022) PhD in Cellular Biology Univ. of Georgia → Senior Scientific Knowledge Engineer
Luisa Mercado (2018-2021) Webster University → Master’s student, Simon Fraser University → Bioinformatics Specialist, University of British Columbia
Alon Galor (2017-2021) Brown → PhD Student University of Oxford
Maxwell Sherman (2016-2019) University of Cambridge → PhD Student EECS
Koray Kirli (2016-2020) PhD in Cell/Cellular and Molecular Biology → Technical Coordinator The German Human Genome-Phenome Archive
Jeremy Johnson (2016-2019) Software Development Lead, 4D Nucleome DCIC
Chad Serrant (2016-2019) BS in Computer Science, MIT → Software Engineer, VMware Tanzu Labs
Carl Vitzthum (2016-2020) BA in Computational Biology, Colby College → Senior Software Engineer, Seres Therapeutics
Alison Barton (2016-2018) University of Cambridge → PhD Student BIG
Alex Balashov (2016-2022) Senior Software Developer, 4D Nucleome DCIC
Scott Ouellette (2015-2019) BS in Computer Science, Wentworth Institute of Technology → Software Developer
Jennifer Marx (2015-2019) MEng in Electrical Engineering, Boston University → Lead Software Developer
Psalm Haseley (2010-2015) Bioinformatics, Rochester Institute of Technology → Programmer
Geehoon Hong (2009-2010) Mathematics, Georgia Tech → Data Analyst, TrackMan
Vidhu Choudhary (2007-2008) MS, University of Rajasthan → Senior Data Consultant, Kaiser Permanente
Jonathan Dreyfuss (2006-2008) Bioinformatics, Boston University → Director, Bioinformatics & Biostatistics Core, Instructor in Medicine, HMS
Weil R Lai (2004-2007) Chemical Engineering, MIT → Medical Student, Tufts University → later Urologist, Hunterdon Medical Center
Richard Kim (2003-2005) CS, Harvard → Medical Student, UCSF
David Michaels Software Engineer
Yoo-Na Kim (2023-2024) Assistant Clinical Research Professor, Yonsei University College of Medicine
Onur Baloglu (2018-2019) Ankara → PhD Candidate METU Ankara
Jumanah Alshenaifi (2016-2016) PhD in Biomedical Sciences UT → Assistant Propject Manager
Mattia Forcato (2014-2014) PhD student University of Modena & Reggio Emilia → Research Assistant Professor
Jae Won Yun (2014-2014) MD, Seoul National University; Fellow, Samsung Medical Center
Luca Petiti (2013-2014) PhD student in Genome Sciences/Genomics Univ. degli Studi di Milano → Postdoctoral Fellow
Marc Streit (2012-2012) Assistant Professor, Johannes Kepler University
Guidantonio Malagoli Tagliazucchi (2012-2012) PhD student University of Modena and Reggio Emilia → Research Fellow
Alexander Lex (2011-2011) PhD student Graz University of Technology → Assistant Professor of CS