single cell analysis
Identification of somatic mutations in single cell DNA sequencing data using a spatial model of allelic imbalance. Nature Communications 2019;10(1):3908.Abstract
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Linked-read analysis identifies mutations in single-cell DNA-sequencing data. Nature Genetics 2019;51:749-754.Abstract
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Single-cell gene fusion detection by scFusion. Nat Commun 2022;13(1):1084.Abstract
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GiniQC: a measure for quantifying noise in single-cell Hi-C data. Bioinformatics 2020;Abstract
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Linking transcriptional and genetic tumor heterogeneity through allele analysis of single-cell RNA-seq data. Genome Research 2018;28(8):1217-1227.Abstract
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PaSD-qc: quality control for single cell whole-genome sequencing data using power spectral density estimation. Nucleic Acids Research 2018;46(4):e20.Abstract
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Cell lineage analysis in human brain using endogenous retroelements. Neuron 2015;85(1):49-59.Abstract
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