Samplename Description m4C_ESC_ES1 Nanog m4C-seq in ESC1 line m4C_ESC_ESR1 Nanog m4C-seq in ESC R1 line m4C_ESC_ESV65 Nanog m4C-seq in ESC V6.5 line m4C_MEF1 Nanog m4C-seq in MEF replicate 1 m4C_MEF2 Nanog m4C-seq in MEF replicate 2 m4C_MEF3 Nanog m4C-seq in MEF replicate 3 m4C_iPSC1 Nanog m4C-seq in iPSC line 1 m4C_iPSC2 Nanog m4C-seq in iPSC line 2 m4C_iPSC3 Nanog m4C-seq in iPSC line 3 m4C_partial-iPSC_TechRepA Nanog m4C-seq in partial iPSC technical replicate A m4C_partial-iPSC_TechRepB Nanog m4C-seq in partial iPSC technical replicate B m4C_partial-iPSC_RepC Nanog m4C-seq in partial iPSC replicate C m4C_ReprogInt_day6_RepA Nanog m4C-seq in Reprogramming intermediates day6 replicate A m4C_ReprogInt_day6_RepB Nanog m4C-seq in Reprogramming intermediates day6 replicate B m4C_ReprogInt_48h Nanog m4C-seq in Reprogramming intermediates 48h m4C_ReprogInt_day6_RepC Nanog m4C-seq in Reprogramming intermediates day6 replicate C m4C_ReprogInt_day9 Nanog m4C-seq in Reprogramming intermediates day9 m4C_ESC_ES1_Med1_ChIP Nanog m4C-seq in ESC1 Med1 ChIP m4C_ESC_ES1_Smc1_ChIP Nanog m4C-seq in ESC1 Smc1a ChIP m4C_ESC_ES1_Med1_ShRNA Nanog m4C-seq in ESC1 Med1 shRNA d5 m4C_ESC_ES1_Smc1_ShRNA Nanog m4C-seq in ESC1 Smc1a shRNA d5 m4C_ESC_GenomicControl Nanog m4C-seq genomic control