Please direct your questions to Peter J. Park.
The page provides download links for various data and results from the following paper: Kharchenko et al, "Comprehensive analysis of the chromatin landscape in Drosophila melanogaster", Nature doi:10.1038/nature09725.
Folded-view browser can be accessed here.
Raw data is available at the main modEncode site.
Chromatin segmentations
Wig files showing association of different genomic regions with the identified chromatin states: [S2] [BG3]
DNase I sensitivity
Raw data
Links to the fastq files: [S2] [BG3] [Kc167]
Smoothed read density
The wig files show DNaseI read density profiles, smoothed with a 150bp Gaussian kernel (primarily meant for visualization purposes): [S2] [BG3] [Kc167]
DNase I hypersensitive sites
The detected (high-magnitude) DHS positions: [S2] [BG3] [Kc167]
The tab-delimited files report the following columns:
- chromosome
- position on the chromosome
- magnitude of the DNase I peak
- maximum likelihood estimate of DNaseI reads enrichment over genomic background expectation (log2 scale)